pypath.inputs§

members:

Functions

get_method(module_name[, method_name])

Retrieves a method from a submodule of this module (inputs) by its name.

Modules

`pypath.inputs.abs`
`pypath.inputs.acsn`
`pypath.inputs.adhesome`
`pypath.inputs.adrecs`
`pypath.inputs.almen2009`
`pypath.inputs.baccin2019`
`pypath.inputs.biogps`
`pypath.inputs.biogrid`
`pypath.inputs.biomart`
`pypath.inputs.biomodels`	This file collects all available models from the biomodels repository using the bioservices python module, then downloads the individual models to parse for the relevant information to enter into pypath.
`pypath.inputs.ca1`
`pypath.inputs.cancercellmap`
`pypath.inputs.cancerdrugsdb`	Web scraper for the CancerDrugs_DB database.
`pypath.inputs.cancersea`
`pypath.inputs.cell`
`pypath.inputs.cellcall`
`pypath.inputs.cellcellinteractions`
`pypath.inputs.cellchatdb`
`pypath.inputs.cellinker`
`pypath.inputs.cellphonedb`
`pypath.inputs.celltalkdb`
`pypath.inputs.celltypist`
`pypath.inputs.chembl`
`pypath.inputs.clinvar`	Variant data from the Clinvar database.
`pypath.inputs.collectri`
`pypath.inputs.common`
`pypath.inputs.compath`
`pypath.inputs.compleat`
`pypath.inputs.complexportal`
`pypath.inputs.comppi`
`pypath.inputs.connectomedb`
`pypath.inputs.corum`
`pypath.inputs.cosmic`
`pypath.inputs.cpad`
`pypath.inputs.cpdb`
`pypath.inputs.credentials`
`pypath.inputs.csa`
`pypath.inputs.cspa`
`pypath.inputs.ctdbase`
`pypath.inputs.cytosig`
`pypath.inputs.dbptm`
`pypath.inputs.ddinter`
`pypath.inputs.deathdomain`
`pypath.inputs.depod`
`pypath.inputs.dgidb`
`pypath.inputs.dip`
`pypath.inputs.diseases`
`pypath.inputs.domino`
`pypath.inputs.dorothea`
`pypath.inputs.drugbank`
`pypath.inputs.drugcentral`
`pypath.inputs.ebi`
`pypath.inputs.elm`
`pypath.inputs.embopress`
`pypath.inputs.embrace`
`pypath.inputs.encode`
`pypath.inputs.ensembl`
`pypath.inputs.eutils`
`pypath.inputs.exocarta`
`pypath.inputs.expasy`
`pypath.inputs.genecards`
`pypath.inputs.go`
`pypath.inputs.gpcrdb`
`pypath.inputs.graphviz`
`pypath.inputs.guide2pharma`
`pypath.inputs.gutmgene`
`pypath.inputs.havugimana`
`pypath.inputs.hgnc`
`pypath.inputs.hippie`
`pypath.inputs.hmdb`
`pypath.inputs.homologene`
`pypath.inputs.hpmr`
`pypath.inputs.hpo`
`pypath.inputs.hprd`
`pypath.inputs.htri`
`pypath.inputs.humancellmap`
`pypath.inputs.humap`
`pypath.inputs.humsavar`
`pypath.inputs.huri`
`pypath.inputs.i3d`
`pypath.inputs.icellnet`
`pypath.inputs.ielm`
`pypath.inputs.imweb`
`pypath.inputs.innatedb`
`pypath.inputs.instruct`
`pypath.inputs.intact`
`pypath.inputs.integrins`
`pypath.inputs.interpro`
`pypath.inputs.intogen`
`pypath.inputs.ipi`
`pypath.inputs.iptmnet`
`pypath.inputs.italk`
`pypath.inputs.kea`
`pypath.inputs.kegg`
`pypath.inputs.kegg_api`
`pypath.inputs.kinasedotcom`
`pypath.inputs.kirouac2010`
`pypath.inputs.lambert2018`
`pypath.inputs.laudanna`
`pypath.inputs.li2012`
`pypath.inputs.lincs`
`pypath.inputs.lmpid`
`pypath.inputs.lncdisease`
`pypath.inputs.lncrnadb`
`pypath.inputs.locate`
`pypath.inputs.lrdb`
`pypath.inputs.macrophage`
`pypath.inputs.main`
`pypath.inputs.matrisome`
`pypath.inputs.matrixdb`
`pypath.inputs.mcam`
`pypath.inputs.membranome`
`pypath.inputs.mimp`
`pypath.inputs.mir2disease`
`pypath.inputs.mirbase`
`pypath.inputs.mirdeathdb`
`pypath.inputs.mirecords`
`pypath.inputs.mirtarbase`
`pypath.inputs.mitab`
`pypath.inputs.mppi`
`pypath.inputs.msigdb`
`pypath.inputs.ncrdeathdb`
`pypath.inputs.negatome`
`pypath.inputs.netbiol`
`pypath.inputs.netpath`
`pypath.inputs.offsides`
`pypath.inputs.oma`
`pypath.inputs.ontology`
`pypath.inputs.opentargets`
`pypath.inputs.opm`
`pypath.inputs.oreganno`
`pypath.inputs.panglaodb`
`pypath.inputs.pathophenodb`
`pypath.inputs.pathwaycommons`
`pypath.inputs.pazar`
`pypath.inputs.pdb`
`pypath.inputs.pdzbase`
`pypath.inputs.pepcyber`
`pypath.inputs.pfam`
`pypath.inputs.pharos`	Retrieve data from the NIH Pharos database.
`pypath.inputs.phobius`
`pypath.inputs.phosphatome`
`pypath.inputs.phosphoelm`
`pypath.inputs.phosphonetworks`
`pypath.inputs.phosphopoint`
`pypath.inputs.phosphosite`
`pypath.inputs.pisa`
`pypath.inputs.pro`
`pypath.inputs.progeny`
`pypath.inputs.proteinatlas`
`pypath.inputs.proteins`
`pypath.inputs.protmapper`
`pypath.inputs.pubchem`
`pypath.inputs.pubmed`
`pypath.inputs.ramilowski2015`
`pypath.inputs.ramp`
`pypath.inputs.rdata`
`pypath.inputs.reaction`
`pypath.inputs.reactome`
`pypath.inputs.scconnect`
`pypath.inputs.science`
`pypath.inputs.sider`
`pypath.inputs.signalink`
`pypath.inputs.signor`
`pypath.inputs.spike`
`pypath.inputs.stitch`
`pypath.inputs.string`
`pypath.inputs.surfaceome`
`pypath.inputs.switches_elm`
`pypath.inputs.talklr`
`pypath.inputs.tcdb`
`pypath.inputs.tfcensus`
`pypath.inputs.threedcomplex`
`pypath.inputs.threedid`
`pypath.inputs.topdb`
`pypath.inputs.transmir`
`pypath.inputs.trip`
`pypath.inputs.trrust`
`pypath.inputs.twosides`
`pypath.inputs.unichem`
`pypath.inputs.uniprot`
`pypath.inputs.uniprot_db`
`pypath.inputs.uniprot_idmapping`
`pypath.inputs.wang`
`pypath.inputs.wojtowicz2020`
`pypath.inputs.zhong2015`