pypath.inputs.go

members:

Functions

get_go_desc(go_ids[, organism])	Deprecated, should be removed soon.
get_go_quick([organism, slim, names_only, ...])	Deprecated, should be removed soon.
get_goslim([url])
go_ancestors([aspects])	Queries the ancestors of GO terms by QuickGO REST API.
go_ancestors_goose([aspects])	Queries the ancestors of GO terms by AmiGO goose.
go_ancestors_quickgo([aspects])	Queries the ancestors of GO terms by QuickGO REST API.
go_annotations([organism, evidence_codes])	Downloads GO annotation from UniProt GOA.
go_annotations_all([organism, fields])
go_annotations_goa([organism, evidence_codes])	Downloads GO annotation from UniProt GOA.
go_annotations_goose([organism, aspects, ...])	Queries GO annotations by AmiGO goose.
go_annotations_quickgo([organism, aspects, ...])	Queries GO annotations by QuickGO REST API.
go_annotations_solr([organism, aspects, ...])	Queries GO annotations by AmiGO Solr.
go_annotations_uniprot([organism, swissprot])	Deprecated, should be removed soon.
go_descendants([aspects, terms, relations, ...])	Queries descendants of GO terms by QuickGO REST API.
go_descendants_goose([aspects])	Queries descendants of GO terms by AmiGO goose.
go_descendants_quickgo([aspects, terms, ...])	Queries descendants of GO terms by QuickGO REST API.
go_descendants_to_ancestors(desc)	Turns a dict of descendants to dict of ancestors by swapping the relationships.
go_terms([aspects])	Queries GO terms by the QuickGO REST API.
go_terms_goose([aspects])	Queries GO terms by AmiGO goose.
go_terms_quickgo([aspects])	Queries GO terms by the QuickGO REST API.
go_terms_solr([aspects])	Queries GO terms by AmiGO Solr.