acsn_biopax()
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acsn_interactions_2(**kwargs)
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get_acsn_effects()
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Processes ACSN data, returns list of effects. |
get_controls(source[, protein_name_type])
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get_interactions(source[, mandatory_refs])
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get_reactions([types, sources])
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get_soup(elem)
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panther_biopax()
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panther_interactions(**kwargs)
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pid_biopax()
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pid_interactions(**kwargs)
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process_complex(depth, cref, entity_uniprot, ...)
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process_controls(controls[, mandatory_refs])
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process_reactions(reactions, entity_uniprot, ...)
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reactions_biopax(biopax_file[, organism, ...])
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Processes a BioPAX file and extracts binary interactions. |
reactome_biopax([organism, cache])
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Downloads Reactome human reactions in SBML format. |
reactome_bs()
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Reactome pathways in SBML format. |
reactome_interactions([cacheFile, ask])
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Downloads and processes Reactome BioPAX. |
reactome_sbml()
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Downloads Reactome human reactions in SBML format. |
