pypath.inputs.phosphosite

members:

Functions

phosphosite_directions([organism])	From curated and HTP PhosphoSite data generates a list of directions.
phosphosite_enzyme_substrate([raw, ...])	Downloads and preprocesses phosphorylation site data from PhosphoSitePlus.
phosphosite_interactions([cache, ncbi_tax_id])	Downloads curated and HTP data from Phosphosite, from preprocessed cache file if available.
phosphosite_interactions_all()
phosphosite_interactions_curated([ncbi_tax_id])	Loads literature curated PhosphoSite data, from preprocessed cache file if available.
phosphosite_interactions_new([cache])	Downloads curated and HTP data from Phosphosite, from preprocessed cache file if available.
phosphosite_interactions_noref([ncbi_tax_id])	Loads HTP PhosphoSite data, from preprocessed cache file if available.
phosphosite_ptm_orthology()	Returns an orthology translation dict of phosphosites based on phosphorylation sites table from PhosphoSitePlus.
phosphosite_ptms([organism])	Downloads the phosphorylation site dataset from PhosphoSitePlus.
phosphosite_regsites()	Downloads and preprocesses the regulatory sites dataset from PhosphoSitePlus.
phosphosite_regsites_one_organism([organism])	Returns PhosphoSitePlus regulatory sites translated to one organism by orthology.
regsites_tab(regsites[, outfile])	Exports PhosphoSite regulatory sites as a tabular file, all IDs translated to UniProt.