pypath.inputs.uniprot§

members:

Functions

deleted_uniprot_genesymbol(identifier)

Retrieves the archived datasheet for a deleted UniProt ID and returns the Gene Symbol and the NCBI Taxonomy ID from the datasheet.

get_uniprot_sec([organism])

Downloads and processes the mapping between secondary and primary UniProt IDs.

protein_datasheet(identifier)

query_builder(*query, **kwargs)

Build a query for the UniProt web site and REST API.

swissprot_deleted()

trembl_deleted([confirm])

uniprot_data(*query[, fields, organism, ...])

Basic client for the UniProt REST API.

uniprot_deleted([confirm])

uniprot_families([organism, reviewed])

uniprot_history(identifier)

Retrieves the history of a record.

uniprot_history_recent_datasheet(identifier)

uniprot_keywords([organism, reviewed])

uniprot_locations([organism, reviewed])

uniprot_ncbi_taxids()

uniprot_ncbi_taxids_2()

uniprot_preprocess(field[, organism, reviewed])

uniprot_query(*query[, fields])

Basic client for the UniProt REST API.

uniprot_recent_version(identifier)

uniprot_taxonomy([ncbi_tax_ids])

From UniProt IDs to organisms

uniprot_tissues([organism, reviewed])

uniprot_topology([organism, reviewed])

valid_uniprot(name)

Checks if name fits the format requirements for UniProt accession numbers.

Classes

Taxon(ncbi_id, latin, english, latin_synonym)

UniprotQuery(*query[, fields])

UniprotRecordHistory(entry_version, ...)