pypath.utils.seq

Utilities for working with protein sequences.

members:

Functions

get_isoforms([organism])	Loads UniProt sequences for all isoforms.
read_fasta(fasta)	Parses a fasta file.
swissprot_seq([organism, reviewed, isoforms])	All UniProt sequences for an organism.

Classes

Pfam()
Resource(loader[, name])
Seq(protein, sequence[, isoform])