pypath.utils.seq.Resource§
- class pypath.utils.seq.Resource(loader, name=None)[source]§
Bases:
object- __init__(loader, name=None)[source]§
Represents a resource of sequence features, e.g. domains, motifs or post-translational modification sites.
Methods
__init__(loader[, name])Represents a resource of sequence features, e.g. domains, motifs or post-translational modification sites.
iterdb([ncbi_tax_id])Iterates over all proteins and features of one organism.
iterprotein(uniprot[, ncbi_tax_id])Iterates over the features of one protein.
load([ncbi_tax_id])Loads the data from the resource for a given organism.
processor(raw)Preprocesses the features loaded from a resource.
unload([ncbi_tax_id])Removes data in order to free up memory.