pypath.utils.seq.swissprot_seq

pypath.utils.seq.swissprot_seq(organism: str | int = 9606, reviewed: bool = True, isoforms: bool = False) → dict[str, Seq]

All UniProt sequences for an organism.

Loads all sequences for an organism, optionally for all isoforms, by default only first isoform.

Parameters:

• organism – Name or NCBI Taxonomy ID of the organism.

• reviewed – Load only reviewed (SwissProt) sequences.

• isoforms – Load all isoforms, not only the first one.

Returns:

A dict with UniProt IDs as keys and Seq objects as values.