pypath.utils.seq.Pfam§

class pypath.utils.seq.Pfam[source]§

Bases: Resource

__init__()[source]§: Provides Pfam domains as sequence features.

Methods

`__init__`()	Provides Pfam domains as sequence features.
`iterdb`([ncbi_tax_id])	Iterates over all proteins and features of one organism.
`iterprotein`(uniprot[, ncbi_tax_id])	Iterates over the features of one protein.
`load`([ncbi_tax_id])	Loads the data from the resource for a given organism.
`processor`(raw)	Preprocesses the features loaded from a resource.
`unload`([ncbi_tax_id])	Removes data in order to free up memory.

iterdb(ncbi_tax_id=9606)§: Iterates over all proteins and features of one organism.

iterprotein(uniprot, ncbi_tax_id=9606)§: Iterates over the features of one protein.

load(ncbi_tax_id=9606)§: Loads the data from the resource for a given organism.

processor(raw)§: Preprocesses the features loaded from a resource.

unload(ncbi_tax_id=None)§: Removes data in order to free up memory.