pypath.utils.uniprot.UniprotProtein§

class pypath.utils.uniprot.UniprotProtein(uniprot_id)[source]§

Bases: object

Methods

`__init__`(uniprot_id)
`has_tag`(tag)
`info_section`(title)	Retrieves a section from the description.
`itertag`(tag)
`load`()
`reload`()
`remove_xrefs`(value)
`update_databases`()
`update_info`()

Attributes

`ac`
`activity_regulation`
`activity_regulation_with_xrefs`
`alternative_products`
`alternative_products_with_xrefs`
`catalytic_activity`
`catalytic_activity_with_xrefs`
`databases`	Returns the database identifiers (cross-references) as a dict of database names and identifiers.
`disease`
`disease_with_xrefs`
`ec`
`full_name`
`function`
`function_genecards`
`function_or_genecards`
`function_with_genecards`
`function_with_xrefs`
`genesymbol`
`id`
`info`
`interaction`
`interaction_with_xrefs`
`is_reviewed`
`keywords`	Returns the keywords as a list.
`keywords_with_xrefs`	Returns the keywords as a list with keeping the cross-references.
`length`	Returns the length (number of residues) of the canonical sequence.
`lengths`	Returns the length of all isoforms as a list.
`organism`
`ptm`
`ptm_with_xrefs`
`sequence`	Returns the canonical sequence (the first one) as a string of standard capital letter residue symbols.
`sequence_caution`
`sequence_caution_with_xrefs`
`similarity`
`similarity_with_xrefs`
`subcellular_location`
`subcellular_location_with_xrefs`
`subunit`
`subunit_with_xrefs`
`tissue_specificity`
`tissue_specificity_with_xrefs`
`web_resource`
`web_resource_with_xrefs`
`weight`	Returns the molecular weight of the canonical isoform in Daltons.
`weights`	Returns the molecular weights of all isoforms as a list.

property databases§: Returns the database identifiers (cross-references) as a dict of database names and identifiers.

info_section(title)[source]§: Retrieves a section from the description. If the section is not availeble, returns None.

property keywords_with_xrefs§: Returns the keywords as a list with keeping the cross-references.

property length§: Returns the length (number of residues) of the canonical sequence.

property sequence§: Returns the canonical sequence (the first one) as a string of standard capital letter residue symbols.

property weight§: Returns the molecular weight of the canonical isoform in Daltons.

property weights§: Returns the molecular weights of all isoforms as a list.