pypath.utils.uniprot§

members:

Functions

ac(uniprot_id, *args, **kwargs)

activity_regulation(uniprot_id, *args, **kwargs)

activity_regulation_with_xrefs(uniprot_id, ...)

alternative_products(uniprot_id, *args, **kwargs)

alternative_products_with_xrefs(uniprot_id, ...)

browse(groups[, start, fileobj])

Browses through a series of protein groups, printing an information table for each group.

catalytic_activity(uniprot_id, *args, **kwargs)

catalytic_activity_with_xrefs(uniprot_id, ...)

collect(uniprot_ids, *features)

Collects data about one or more UniProt IDs.

databases(uniprot_id, *args, **kwargs)

Returns the database identifiers (cross-references) as a dict of database names and identifiers.

disease(uniprot_id, *args, **kwargs)

disease_with_xrefs(uniprot_id, *args, **kwargs)

ec(uniprot_id, *args, **kwargs)

features_table(uniprot_ids, *features[, ...])

Returns a table with the requested features of a list of UniProt IDs.

full_name(uniprot_id, *args, **kwargs)

function(uniprot_id, *args, **kwargs)

function_genecards(uniprot_id, *args, **kwargs)

function_or_genecards(uniprot_id, *args, ...)

function_with_genecards(uniprot_id, *args, ...)

function_with_xrefs(uniprot_id, *args, **kwargs)

genesymbol(uniprot_id, *args, **kwargs)

has_tag(uniprot_id, *args, **kwargs)

id(uniprot_id, *args, **kwargs)

info(*uniprot_ids[, features, fileobj, header])

Prints a table with the most important (or the requested) features of a list of UniProt IDs.

info_section(uniprot_id, *args, **kwargs)

Retrieves a section from the description.

interaction(uniprot_id, *args, **kwargs)

interaction_with_xrefs(uniprot_id, *args, ...)

is_reviewed(uniprot_id, *args, **kwargs)

itertag(uniprot_id, *args, **kwargs)

keywords(uniprot_id, *args, **kwargs)

Returns the keywords as a list.

keywords_with_xrefs(uniprot_id, *args, **kwargs)

Returns the keywords as a list with keeping the cross-references.

length(uniprot_id, *args, **kwargs)

Returns the length (number of residues) of the canonical sequence.

lengths(uniprot_id, *args, **kwargs)

Returns the length of all isoforms as a list.

load(uniprot_id, *args, **kwargs)

organism(uniprot_id, *args, **kwargs)

print_features(uniprot_ids, *features[, ...])

Prints a table with the requested features of a list of UniProt IDs.

ptm(uniprot_id, *args, **kwargs)

ptm_with_xrefs(uniprot_id, *args, **kwargs)

query(*uniprot_ids)

Queries the datasheet of one or more UniProt IDs.

reload(uniprot_id, *args, **kwargs)

remove_xrefs(uniprot_id, *args, **kwargs)

sequence(uniprot_id, *args, **kwargs)

Returns the canonical sequence (the first one) as a string of standard capital letter residue symbols.

sequence_caution(uniprot_id, *args, **kwargs)

sequence_caution_with_xrefs(uniprot_id, ...)

similarity(uniprot_id, *args, **kwargs)

similarity_with_xrefs(uniprot_id, *args, ...)

subcellular_location(uniprot_id, *args, **kwargs)

subcellular_location_with_xrefs(uniprot_id, ...)

subunit(uniprot_id, *args, **kwargs)

subunit_with_xrefs(uniprot_id, *args, **kwargs)

tissue_specificity(uniprot_id, *args, **kwargs)

tissue_specificity_with_xrefs(uniprot_id, ...)

update_databases(uniprot_id, *args, **kwargs)

update_info(uniprot_id, *args, **kwargs)

web_resource(uniprot_id, *args, **kwargs)

web_resource_with_xrefs(uniprot_id, *args, ...)

weight(uniprot_id, *args, **kwargs)

Returns the molecular weight of the canonical isoform in Daltons.

weights(uniprot_id, *args, **kwargs)

Returns the molecular weights of all isoforms as a list.

Classes

UniprotProtein(uniprot_id)