pypath.internals.intera.DomainMotif

class pypath.internals.intera.DomainMotif(domain, ptm, evidences=None, pdbs=None)

Bases: object

__init__(domain, ptm, evidences=None, pdbs=None)

Methods

__init__(domain, ptm[, evidences, pdbs])
add_evidences(evidences)
add_pdbs(pdbs)
get_line([resources_only_primary])	Returns a list intended to be a row in a data frame of enzyme-substrate relationships.
get_proteins()
key()	Returns a unique key which is a tuple of the proteins, the residue and the modification type.
merge(other)
print_residues()
references()
references_by_resource([only_primary])
references_by_resource_str([only_primary])
resources([only_primary])
serialize()

get_line(resources_only_primary=False)

Returns a list intended to be a row in a data frame of enzyme-substrate relationships.

Elements of the list:

• enzyme

• enzyme_genesymbol

• substrate

• substrate_genesymbol

• isoforms

• residue_type

• residue_offset

• modification

• sources

• references

• curation_effort

key()

Returns a unique key which is a tuple of the proteins, the residue and the modification type.