pypath.internals.input_formats.ProMapping

class pypath.internals.input_formats.ProMapping(id_type_a, id_type_b=None, pro_id_type_a=None, pro_id_type_b=None, ncbi_tax_id=-1)

Bases: MappingInput

Provides parameters for mapping table from the Protein Ontology Consortium.

Parameters:

• id_type_a (str) – Custom name for one of the ID types.

• id_type_b (str) – Custom name for the other ID type.

• pro_id_type_a (str) – This is the symbol PRO uses to label the IDs. These are included in the module and set automatically, the argument only gives a way to override this.

• pro_id_type_b (str) – Same as above just for the other ID type.

__init__(id_type_a, id_type_b=None, pro_id_type_a=None, pro_id_type_b=None, ncbi_tax_id=-1)

Methods

__init__(id_type_a[, id_type_b, ...])
possible(id_type_a, id_type_b[, ncbi_tax_id])
resource_id_type(id_type[, override])
swap_sides()