pypath.inputs.string.string_links_interactions

pypath.inputs.string.string_links_interactions(ncbi_tax_id: int = 9606, score_threshold: int | Literal['highest_confidence', 'high_confidence', 'medium_confidence', 'low_confidence'] = 'highest_confidence', physical_interaction_score: bool = True) → list[tuple]

Downloads protein network data, including subscores per channel. The output contains both functional and physical protein associations. The combined physical interaction score is defined between the proteins for which we have evidence of their binding or forming a physical complex.

Args

score_threshold: Minimum required interaction score. user can use

pre-defined confidence limits or can define a custom value.