pypath.inputs.homologene.homologene_uniprot_dict

pypath.inputs.homologene.homologene_uniprot_dict(source, target, only_swissprot=True)

Returns orthology translation table as dict from UniProt to Uniprot, obtained from NCBI HomoloGene data. Uses RefSeq and Entrez IDs for translation.

Args

source (int): NCBI Taxonomy ID of the source species (keys). target(int): NCBI Taxonomy ID of the target species (values). only_swissprot (bool): Use only SwissProt IDs.

Returns

Dict of sets: keys are UniProt IDs of the source organism, values are sets of UniProt IDs of the target organism.