pypath.inputs.homologene.homologene_dict

pypath.inputs.homologene.homologene_dict(source, target, id_type)

Returns orthology translation table as dict, obtained from NCBI HomoloGene data.

Args

source (int): NCBI Taxonomy ID of the source species (keys). target (int): NCBI Taxonomy ID of the target species (values). id_type (str): ID type to be used in the dict. Possible values:

‘RefSeq’, ‘Entrez’, ‘GI’, ‘GeneSymbol’.

Returns

Dict of sets: keys are IDs of the source organism, values are sets of IDs of the target organism.