pypath.core.complex.AbstractComplexResource

class pypath.core.complex.AbstractComplexResource(name, ncbi_tax_id=9606, input_method=None, input_args=None, dump=None, **kwargs)

Bases: AbstractResource

A resource which provides information about molecular complexes.

__init__(name, ncbi_tax_id=9606, input_method=None, input_args=None, dump=None, **kwargs)

namestr

Custom name for the resource.

input_methodcallable

Method providing the input data.

process_methodcallable

Method processing the data and yielding intera.Complex instances.

Methods

__init__(name[, ncbi_tax_id, input_method, ...])	name : str
from_dump()
load()
load_data()	Loads the data by calling input_method.
make_df()
process()	Calls the _process_method.
save_to_pickle(pickle_file)
set_method()	Sets the data input method by looking up in inputs module if necessary.
update_index()

Attributes

all_sources
curation_effort
has_stoichiometry
heteromers
homomers
numof_references
summary
summary_str

load_data()

Loads the data by calling input_method.

process()

Calls the _process_method.

set_method()

Sets the data input method by looking up in inputs module if necessary.