pypath.internals.resource.AbstractResource

class pypath.internals.resource.AbstractResource(name, ncbi_tax_id=9606, input_method=None, input_args=None, dump=None, data_attr_name=None, **kwargs)

Bases: Logger

Generic class for downloading, processing and serving data from a resource.

__init__(name, ncbi_tax_id=9606, input_method=None, input_args=None, dump=None, data_attr_name=None, **kwargs)

namestr

Custom name for the resource.

input_methodcallable

Method providing the input data.

Methods

__init__(name[, ncbi_tax_id, input_method, ...])	name : str
from_dump()
load()
load_data()	Loads the data by calling input_method.
process()	Calls the _process_method.
save_to_pickle(pickle_file)
set_method()	Sets the data input method by looking up in inputs module if necessary.

load_data()

Loads the data by calling input_method.

process()

Calls the _process_method.

set_method()

Sets the data input method by looking up in inputs module if necessary.