pypath.utils.taxonomy

members:

Functions

ensure_common_name(taxon_id[, lower])	Common English name of an organism.
ensure_ensembl_name(taxon_id)
ensure_latin_name(taxon_id)
ensure_ncbi_tax_id(taxon_id)	For taxon names of various formats returns NCBI Taxonomy ID if possible.
get_db(key)
init_db(key)
short_latin_names(long_names)	For a dict of long latin names returns a dict with all names shortened.
shorten_latin_name(name[, dot])	For a complete latin name, returns its shortened version.
taxid_from_common_name(taxon_name)
taxid_from_dbptm_taxon_name(taxon_name)
taxid_from_ensembl_name(taxon_name)
taxid_from_latin_name(taxon_name)
taxid_from_nonstandard(taxon_name)
uniprot_taxid(uniprot)	For a UniProt ID returns its NCBI Taxonomy ID.