pypath.utils.go§

members:

Functions

annotate(graph[, organism, aspects])

Adds Gene Ontology annotations to the nodes of a graph.

get_db([organism, pickle_file, use_pickle_cache])

Retrieves the current database instance and initializes it if does not exist yet.

init_db([organism, pickle_file, ...])

Initializes or reloads the GO annotation database.

load_go(graph[, organism, aspects])

Adds Gene Ontology annotations to the nodes of a graph.

Classes

GOAnnotation([organism, ontology, ...])

GOCustomAnnotation(categories[, go_annot, ...])

GeneOntology([terms, ancestors, ...])