pypath.inputs.stitch.stitch_links_interactions

pypath.inputs.stitch.stitch_links_interactions(ncbi_tax_id: int = 9606, score_threshold: Number | Literal['highest_confidence', 'high_confidence', 'medium_confidence', 'low_confidence'] = 'highest_confidence', physical_interaction_score: bool = True) → List[tuple]

Downloads chemical-protein links (with detailed subscores). The combined physical interaction score is defined between the interactors for which we have evidence of their binding.

Args

score_threshold: Minimum required interaction score. user can use

pre-defined confidence limits or can define a custom value.