pypath.inputs.ielm.get_ielm_huge§

pypath.inputs.ielm.get_ielm_huge(ppi, id_type='UniProtKB_AC', mydomains='HMMS', maxwait=180, cache=True, part_size=500, headers=None)[source]§

Loads iELM predicted domain-motif interaction data for a set of protein-protein interactions. This method breaks the list into reasonable sized chunks and performs multiple requests to iELM, and also retries in case of failure, with reducing the request size. Provides feedback on the console.

Parameters:

id_type (str) – The type of the IDs in the supplied interaction list. Default is ‘UniProtKB_AC’. Please refer to iELM what type of IDs it does understand.
mydomains (str) – The type of the domain detection method. Defaults to ‘HMMS’. Please refer to iELM for alternatives.
maxwait (int) – The limit of the waiting time in seconds.
cache (bool) – Whether to use the cache or download everything again.
part_size (int) – The number of interactions to be queried in one request.
headers (list) – Additional HTTP headers to send to iELM with each request.