pypath.inputs.collectri.collectri_interactions

pypath.inputs.collectri.collectri_interactions(protein_coding: bool = True, mirna: bool = False) → list[tuple]

TF-target interactions from the CollecTRI database.

While collectri_raw returns the records in the same format as in the original data, here we translate identifiers to UniProt IDs, and use Complex objects to represent protein complexes.

Parameters:

• protein_coding – Include regulation of protein coding genes.

• mirna – Include regulation of miRNA coding genes.