pypath.inputs.biogps.biogps_download_all

pypath.inputs.biogps.biogps_download_all(organism=None, exclude=None, only=None)

Downloads all expression data from BioGPS.

Args

organism (str,int): Restrict the download to this organism. Human,

mouse and rat datasets are available.

exclude (str,set): One or more datasets to exclude. Should be

dataset labels as shown by biogps_datasets.

only (str,set): Restrict the download only to these datasets.

Returns

(dict): Dict of pandas data frames, keys are dataset labels, values

are data frames of expression values, columns are tissues, cell types or cell lines, rows are microarray probes representing transcripts.