pypath.inputs.biogps.biogps_annotations

pypath.inputs.biogps.biogps_annotations(organism=9606, exclude=None, only=None)

Expression data from BioGPS compiled in the annotation format commonly used in this module.

Args

organism (int,str): Name or ID of the organism. This function

is able to process data for one organism at once.

exclude (str,set): One or more datasets to exclude. Should be

dataset labels as shown by biogps_datasets.

only (str,set): Restrict the download only to these datasets.

Returns

(dict): Dict of annotations, keys are UniProt IDs, values are

sets of named tuples of annotations.