Source code for pypath.inputs.pazar

#!/usr/bin/env python
# -*- coding: utf-8 -*-

#
#  This file is part of the `pypath` python module
#
#  Copyright 2014-2023
#  EMBL, EMBL-EBI, Uniklinik RWTH Aachen, Heidelberg University
#
#  Authors: see the file `README.rst`
#  Contact: Dénes Türei (turei.denes@gmail.com)
#
#  Distributed under the GPLv3 License.
#  See accompanying file LICENSE.txt or copy at
#      https://www.gnu.org/licenses/gpl-3.0.html
#
#  Website: https://pypath.omnipathdb.org/
#

import collections

import pypath.share.curl as curl
import pypath.resources.urls as urls




def pazar_interactions():

    PazarInteraction = collections.namedtuple(
        'PazarInteraction',
        ('tf', 'target', 'pmid'),
    )

    url = urls.urls['pazar']['url_rescued']
    c = curl.Curl(url, silent = False)
    data = c.result

    return [
        PazarInteraction(*map(x.split('\t').__getitem__, (1, 4, 10)))
        for x in ''.join(data.values()).split('\n')
        if len(x) > 0
    ]